Package org.monarchinitiative.lirical.io.output

Class SparklinePacket

java.lang.Object

org.monarchinitiative.lirical.io.output.SparklinePacket

public class SparklinePacket
extends Object

This class encapsulates all of the information we need to produce one row of the sparkline table.

Method Summary

Modifier and Type	Method	Description
double	getCompositeLikelihoodRatio()
String	getDiseaseAnchor()
String	getDiseaseName()
String	getGeneSparklineSvg()
String	getGeneSymbol()
String	getPosttestBarSvg()
int	getRank()
String	getSparklineSvg()
static List<SparklinePacket>	sparklineFactory(AnalysisResults results, org.monarchinitiative.phenol.annotations.formats.hpo.HpoDiseases diseases, org.monarchinitiative.phenol.ontology.data.MinimalOntology ontology, boolean showDiseasesWithNoDeleteriousVariants, int N)	Factory method for genotype-phenotype analysis.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

sparklineFactory

public static List<SparklinePacket> sparklineFactory(AnalysisResults results,
 org.monarchinitiative.phenol.annotations.formats.hpo.HpoDiseases diseases,
 org.monarchinitiative.phenol.ontology.data.MinimalOntology ontology,
 boolean showDiseasesWithNoDeleteriousVariants,
 int N)

Factory method for genotype-phenotype analysis.

getRank

public int getRank()

getPosttestBarSvg

public String getPosttestBarSvg()

getSparklineSvg

public String getSparklineSvg()

getCompositeLikelihoodRatio

public double getCompositeLikelihoodRatio()

getGeneSymbol

public String getGeneSymbol()

getDiseaseName

public String getDiseaseName()

getDiseaseAnchor

public String getDiseaseAnchor()

getGeneSparklineSvg

public String getGeneSparklineSvg()