Package org.monarchinitiative.lirical.io.service

Class JannovarFunctionalVariantAnnotator

java.lang.Object

org.monarchinitiative.lirical.io.service.JannovarFunctionalVariantAnnotator

All Implemented Interfaces:

FunctionalVariantAnnotator

public class JannovarFunctionalVariantAnnotator
extends Object
implements FunctionalVariantAnnotator

Method Summary

Modifier and Type	Method	Description
List<TranscriptAnnotation>	annotate(org.monarchinitiative.svart.GenomicVariant variant)
static JannovarFunctionalVariantAnnotator	of(de.charite.compbio.jannovar.data.JannovarData jannovarData, org.monarchinitiative.phenol.annotations.formats.GeneIdentifiers geneIdentifiers)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

of

public static JannovarFunctionalVariantAnnotator of(de.charite.compbio.jannovar.data.JannovarData jannovarData,
 org.monarchinitiative.phenol.annotations.formats.GeneIdentifiers geneIdentifiers)

annotate

public List<TranscriptAnnotation> annotate(org.monarchinitiative.svart.GenomicVariant variant)

Specified by:

annotate in interface FunctionalVariantAnnotator