Package org.monarchinitiative.lirical.io.vcf

Class VcfVariantParserFactory

java.lang.Object

org.monarchinitiative.lirical.io.vcf.VcfVariantParserFactory

All Implemented Interfaces:

VariantParserFactory

public class VcfVariantParserFactory
extends Object
implements VariantParserFactory

Method Summary

Modifier and Type	Method	Description
Optional<VariantParser>	forPath(Path path, GenomeBuild genomeBuild, TranscriptDatabase transcriptDatabase)
static VcfVariantParserFactory	of(FunctionalVariantAnnotatorService variantAnnotatorService, VariantMetadataServiceFactory metadataServiceFactory)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

of

public static VcfVariantParserFactory of(FunctionalVariantAnnotatorService variantAnnotatorService,
 VariantMetadataServiceFactory metadataServiceFactory)

forPath

public Optional<VariantParser> forPath(Path path,
 GenomeBuild genomeBuild,
 TranscriptDatabase transcriptDatabase)

Specified by:

forPath in interface VariantParserFactory