Uses of Class
org.monarchinitiative.lirical.cli.cmd.OutputCommand

Packages that use OutputCommand

Package	Description
org.monarchinitiative.lirical.cli.cmd	Commands to run LIRICAL in different configurations.
org.monarchinitiative.lirical.cli.cmd.experimental	Package with experimental LIRICAL commands.

Uses of OutputCommand in org.monarchinitiative.lirical.cli.cmd

Subclasses of OutputCommand in org.monarchinitiative.lirical.cli.cmd

Modifier and Type	Class	Description
class	PhenopacketCommand	Run LIRICAL from a Phenopacket -- with or without accompanying VCF file.
class	PrioritizeCommand
class	YamlCommand	This class coordinates the main analysis of a VCF file plus list of observed HPO terms.

Uses of OutputCommand in org.monarchinitiative.lirical.cli.cmd.experimental

Subclasses of OutputCommand in org.monarchinitiative.lirical.cli.cmd.experimental

Modifier and Type	Class	Description
class	PhenopacketsCommand	Run LIRICAL in phenotype-only mode on a collection of phenopackets.