Uses of Package
org.monarchinitiative.lirical.core.model
Packages that use org.monarchinitiative.lirical.core.model
Package
Description
A high-level representation of LIRICAL analysis.
APIs for reading and annotation of genomic variants.
Package with logic for calculation of likelihood ratios for phenotypic or genotypic test results.
Package with data models.
Sanitize the user-provided
SanitationInputs.Package with services used across LIRICAL.
Parsers for LIRICAL.
Read user input formatted as a v1 or v2 phenopacket.
Classes for writing out LIRICAL analysis results into HTML, TSV, and JSON files.
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Classes in org.monarchinitiative.lirical.core.model used by org.monarchinitiative.lirical.background
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Classes in org.monarchinitiative.lirical.core.model used by org.monarchinitiative.lirical.core.analysisClassDescriptionConvenience class to represent the age of a subject.Container for
Gene2Genotypes present in the analysis. -
Classes in org.monarchinitiative.lirical.core.model used by org.monarchinitiative.lirical.core.ioClassDescriptionA description of variant coordinates, sample genotypes, and filtering status for LIRICAL analysis.
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Classes in org.monarchinitiative.lirical.core.model used by org.monarchinitiative.lirical.core.likelihoodratio
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Classes in org.monarchinitiative.lirical.core.model used by org.monarchinitiative.lirical.core.modelClassDescriptionConvenience class to represent the age of a subject.A subset of ClinVar allele data relevant for LIRICAL analysis.Clinvar clinical significance categories.A summary of variant input and functional annotation.Gene2Genotype represents variants that have been annotated to a single gene.Container for
Gene2Genotypes present in the analysis.A description of variant coordinates, sample genotypes, and filtering status for LIRICAL analysis.A container for associating sample id and theAlleleCount.The interface represents variant functional annotation data required by LIRICAL. -
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Classes in org.monarchinitiative.lirical.core.model used by org.monarchinitiative.lirical.core.serviceClassDescriptionClinvar clinical significance categories.The interface represents variant functional annotation data required by LIRICAL.
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Classes in org.monarchinitiative.lirical.core.model used by org.monarchinitiative.lirical.io
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Classes in org.monarchinitiative.lirical.core.model used by org.monarchinitiative.lirical.io.analysisClassDescriptionConvenience class to represent the age of a subject.A description of variant coordinates, sample genotypes, and filtering status for LIRICAL analysis.
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Classes in org.monarchinitiative.lirical.core.model used by org.monarchinitiative.lirical.io.outputClassDescriptionGene2Genotype represents variants that have been annotated to a single gene.The interface represents variant functional annotation data required by LIRICAL.
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Classes in org.monarchinitiative.lirical.core.model used by org.monarchinitiative.lirical.io.serviceClassDescriptionThe interface represents variant functional annotation data required by LIRICAL.
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Classes in org.monarchinitiative.lirical.core.model used by org.monarchinitiative.lirical.io.vcfClassDescriptionA description of variant coordinates, sample genotypes, and filtering status for LIRICAL analysis.