Uses of Class
org.monarchinitiative.exomiser.core.proto.AlleleProto.AlleleKey

Packages that use AlleleProto.AlleleKey

Package	Description
org.monarchinitiative.exomiser.core.proto
org.monarchinitiative.lirical.exomiser_db_adapter
org.monarchinitiative.lirical.exomiser_db_adapter.model
org.monarchinitiative.lirical.exomiser_db_adapter.serializers

Uses of AlleleProto.AlleleKey in org.monarchinitiative.exomiser.core.proto

Methods in org.monarchinitiative.exomiser.core.proto that return AlleleProto.AlleleKey

Modifier and Type	Method	Description
AlleleProto.AlleleKey	AlleleProto.AlleleKey.Builder.build()
AlleleProto.AlleleKey	AlleleProto.AlleleKey.Builder.buildPartial()
static AlleleProto.AlleleKey	AlleleProto.AlleleKey.getDefaultInstance()
AlleleProto.AlleleKey	AlleleProto.AlleleKey.Builder.getDefaultInstanceForType()
AlleleProto.AlleleKey	AlleleProto.AlleleKey.getDefaultInstanceForType()
static AlleleProto.AlleleKey	AlleleProto.AlleleKey.parseDelimitedFrom(InputStream input)
static AlleleProto.AlleleKey	AlleleProto.AlleleKey.parseDelimitedFrom(InputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static AlleleProto.AlleleKey	AlleleProto.AlleleKey.parseFrom(byte[] data)
static AlleleProto.AlleleKey	AlleleProto.AlleleKey.parseFrom(byte[] data, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static AlleleProto.AlleleKey	AlleleProto.AlleleKey.parseFrom(com.google.protobuf.ByteString data)
static AlleleProto.AlleleKey	AlleleProto.AlleleKey.parseFrom(com.google.protobuf.ByteString data, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static AlleleProto.AlleleKey	AlleleProto.AlleleKey.parseFrom(com.google.protobuf.CodedInputStream input)
static AlleleProto.AlleleKey	AlleleProto.AlleleKey.parseFrom(com.google.protobuf.CodedInputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static AlleleProto.AlleleKey	AlleleProto.AlleleKey.parseFrom(InputStream input)
static AlleleProto.AlleleKey	AlleleProto.AlleleKey.parseFrom(InputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static AlleleProto.AlleleKey	AlleleProto.AlleleKey.parseFrom(ByteBuffer data)
static AlleleProto.AlleleKey	AlleleProto.AlleleKey.parseFrom(ByteBuffer data, com.google.protobuf.ExtensionRegistryLite extensionRegistry)

Methods in org.monarchinitiative.exomiser.core.proto that return types with arguments of type AlleleProto.AlleleKey

Modifier and Type	Method	Description
com.google.protobuf.Parser<AlleleProto.AlleleKey>	AlleleProto.AlleleKey.getParserForType()
static com.google.protobuf.Parser<AlleleProto.AlleleKey>	AlleleProto.AlleleKey.parser()

Methods in org.monarchinitiative.exomiser.core.proto with parameters of type AlleleProto.AlleleKey

Modifier and Type	Method	Description
AlleleProto.AlleleKey.Builder	AlleleProto.AlleleKey.Builder.mergeFrom(AlleleProto.AlleleKey other)
static AlleleProto.AlleleKey.Builder	AlleleProto.AlleleKey.newBuilder(AlleleProto.AlleleKey prototype)

Uses of AlleleProto.AlleleKey in org.monarchinitiative.lirical.exomiser_db_adapter

Methods in org.monarchinitiative.lirical.exomiser_db_adapter that return types with arguments of type AlleleProto.AlleleKey

Modifier and Type	Method	Description
static org.h2.mvstore.MVMap<AlleleProto.AlleleKey,AlleleProto.AlleleProperties>	MvStoreUtil.openAlleleMVMap(org.h2.mvstore.MVStore mvStore)	Opens the 'alleles' map from the MVStore.
static org.h2.mvstore.MVMap<AlleleProto.AlleleKey,AlleleProto.ClinVar>	MvStoreUtil.openClinVarMVMap(org.h2.mvstore.MVStore mvStore)	Opens the 'clinvar' map from the MVStore.

Uses of AlleleProto.AlleleKey in org.monarchinitiative.lirical.exomiser_db_adapter.model

Methods in org.monarchinitiative.lirical.exomiser_db_adapter.model that return AlleleProto.AlleleKey

Modifier and Type	Method	Description
static AlleleProto.AlleleKey	AlleleProtoAdaptor.toAlleleKey(int contigId, int start, String ref, String alt)
static AlleleProto.AlleleKey	AlleleProtoAdaptor.toAlleleKey(org.monarchinitiative.svart.GenomicVariant variant)

Uses of AlleleProto.AlleleKey in org.monarchinitiative.lirical.exomiser_db_adapter.serializers

Methods in org.monarchinitiative.lirical.exomiser_db_adapter.serializers that return AlleleProto.AlleleKey

Modifier and Type	Method	Description
AlleleProto.AlleleKey[]	AlleleKeyDataType.createStorage(int size)

Methods in org.monarchinitiative.lirical.exomiser_db_adapter.serializers that return types with arguments of type AlleleProto.AlleleKey

Modifier and Type	Method	Description
com.google.protobuf.Parser<AlleleProto.AlleleKey>	AlleleKeyDataType.messageParser()

Methods in org.monarchinitiative.lirical.exomiser_db_adapter.serializers with parameters of type AlleleProto.AlleleKey

Modifier and Type	Method	Description
int	AlleleKeyDataType.compare(AlleleProto.AlleleKey a, AlleleProto.AlleleKey b)	Sorts variants according to their natural ordering of genome position.