Uses of Interface
org.monarchinitiative.lirical.core.model.VariantMetadata

Packages that use VariantMetadata

Package	Description
org.monarchinitiative.lirical.core.model	Package with data models.
org.monarchinitiative.lirical.core.service	Package with services used across LIRICAL.

Uses of VariantMetadata in org.monarchinitiative.lirical.core.model

Subinterfaces of VariantMetadata in org.monarchinitiative.lirical.core.model

Modifier and Type	Interface	Description
interface	LiricalVariant

Methods in org.monarchinitiative.lirical.core.model that return VariantMetadata

Modifier and Type	Method	Description
static VariantMetadata	VariantMetadata.empty()
static VariantMetadata	VariantMetadata.of(float frequency, float pathogenicity, ClinVarAlleleData clinVarAlleleData)

Methods in org.monarchinitiative.lirical.core.model with parameters of type VariantMetadata

Modifier and Type	Method	Description
static int	VariantMetadata.compareByPathogenicity(VariantMetadata left, VariantMetadata right)	Deprecated, for removal: This API element is subject to removal in a future version. the function has been deprecated without replacement and will be removed in v3.0.0.
static LiricalVariant	LiricalVariant.of(GenotypedVariant variant, List<TranscriptAnnotation> annotations, VariantMetadata metadata)

Uses of VariantMetadata in org.monarchinitiative.lirical.core.service

Methods in org.monarchinitiative.lirical.core.service that return VariantMetadata

Modifier and Type	Method	Description
VariantMetadata	NoOpVariantMetadataService.metadata(org.monarchinitiative.svart.GenomicVariant variant, List<de.charite.compbio.jannovar.annotation.VariantEffect> effects)
VariantMetadata	VariantMetadataService.metadata(org.monarchinitiative.svart.GenomicVariant variant, List<de.charite.compbio.jannovar.annotation.VariantEffect> effects)