Uses of Package
org.monarchinitiative.lirical.core.service
Packages that use org.monarchinitiative.lirical.core.service
Package
Description
Classes related to calculating the distribution of pathogenicity scores of ClinVar or all GNOMAD variants.
Core functionality of the LIRICAL algorithm.
Default LIRICAL analysis implementation.
Package with logic for calculation of likelihood ratios for phenotypic or genotypic test results.
Package with services used across LIRICAL.
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Classes in org.monarchinitiative.lirical.core.service used by org.monarchinitiative.lirical.configurationClassDescriptionVariantMetadataServiceFactory knows about
VariantMetadataServices for all genome builds that have been configured for a givenLiricalinstance. -
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Classes in org.monarchinitiative.lirical.core.service used by org.monarchinitiative.lirical.coreClassDescriptionFunctionalVariantAnnotatorService knows about
FunctionalVariantAnnotators for all genome build and transcript database combinations that have been configured for a givenLiricalinstance.VariantMetadataServiceFactory knows aboutVariantMetadataServices for all genome builds that have been configured for a givenLiricalinstance. -
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Classes in org.monarchinitiative.lirical.core.service used by org.monarchinitiative.lirical.core.serviceClassDescriptionA
VariantMetadataServiceimplementation used when the variant data is not available.VariantMetadataServiceFactory knows aboutVariantMetadataServices for all genome builds that have been configured for a givenLiricalinstance.Class to represent pathogenicity data available for a genomic variant. -
Classes in org.monarchinitiative.lirical.core.service used by org.monarchinitiative.lirical.exomiser_db_adapterClassDescriptionVariantMetadataServiceFactory knows about
VariantMetadataServices for all genome builds that have been configured for a givenLiricalinstance. -
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Classes in org.monarchinitiative.lirical.core.service used by org.monarchinitiative.lirical.io.serviceClassDescriptionFunctionalVariantAnnotatorService knows about
FunctionalVariantAnnotators for all genome build and transcript database combinations that have been configured for a givenLiricalinstance. -
Classes in org.monarchinitiative.lirical.core.service used by org.monarchinitiative.lirical.io.vcfClassDescriptionFunctionalVariantAnnotatorService knows about
FunctionalVariantAnnotators for all genome build and transcript database combinations that have been configured for a givenLiricalinstance.VariantMetadataServiceFactory knows aboutVariantMetadataServices for all genome builds that have been configured for a givenLiricalinstance.