Output files

LIRICAL accepts phenopackets or YAML files as input (see Running LIRICAL). In either case, LIRICAL can output results in several data formats:

• an HTML file with a detailed summary of its analysis results,

• a tab-separated value (TSV) file for review in a table editor (e.g. Excel) or for using in bioinformatic pipelines, or

• a JSON file for downstream bioinformatic pipeline.

The HTML report is generated by default. Use the -f | --output-format option to request other data formats (e.g. --output-format html --output-format json to get HTML and JSON files).

• LIRICAL HTML output
• LIRICAL TSV output
• LIRICAL JSON output